Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015814690.1_cds_XP_016498031.1_12105
CDS Infomation

[gene=LOC107816795] [db_xref=GeneID:107816795] [protein=protein RRC1-like] [partial=5'] [exception=annotated by transcript or proteomic data] [protein_id=XP_016498031.1] [location=complement(join(37159..37445,39487..39653,42287..43083,43185..43409,43797..43934,44070..44154,44918..44976,45173..45394,45542..>45601))] [gbkey=CDS]
Sequence

ATCTTATCTGGTCCATCAGGTCCTCCAGTTACTTCTATACCAAGCCAGAACTCTGAACTG
GTTCTTACCCCAAATGTACCTGATATTATGGTTGTCCCACCGGAAGATGATCACCTTTGC
CATGTTATTGATACCATGTCTCTGTATGTTCTCGATGGAGGCTGTGCTTTTGAGCAGGCC
ATAATGGAGCGAGGCCGTGGGAATTCTCTCTTCAACTTCTTATTTGAGCTTGGCTCCAAG
GAGCATACATATTATGTTTGGAGACTTTATTCTTTTGCTCAGGGGGATACTCTTCAACGC
TGGCGCACAGAACCTTTTATCATGATAAGTGGTAGTGGAAGGTGGATACCACCTCCTCTG
CCTACATCAAAAGGAGACGAGAATGAAAGGGAATTGGGGACTGCATATGCTACTGGAAAA
AGCAGGCGTGTAGAAGTAGAAAGGACATTAACTGATGCACAGAGAGATGAATTTGAAGAT
ATGCTACGTTCATTGACTCTTGAAAGAAGTCAGATAAGAGAAGCAATGGGTTTTGCTCTA
GACAATGCTGATGCTGCTGGAGAGGTAGTTGAAGTTCTAACAGAGTCTTTGACGCTTAAA
GAAACTCCAATACCAACAAAAGTTGCCCGGCTTATGCTTGTCTCAGATATTCTCCACAAT
AGTAGTGCTCCTATTAAGAATGCATCAGCATATCGCACTAAATTTGAAGCCACTTTACCA
GACATAATGGAAAGTTTCAATGACTTGTATCGTAGTATTACAGGAAGGATTACTGCTGAG
GCCCTCAAAGAGAGAGTTCTGAAAGTTCTTCAAGTGTGGGCTGATTGGTTTTTATTTTCC
GATGCTTATGTCAATGGTTTACGGGCAACTTTTCTTCGATCTGGGAACTCCGGTGTCATC
CTCTTTCATTCTCTTGGTGGTGATGCCCCTGAACTAGAACAAACGATCAGCACTAAAACT
GCCCTGGATGGTGACAAGGTTAACCAAGATGCTGCACTGGCAATTGGGAAAGGAGCTGCC
ATGAAAGAGCTACTGAGTCTTCCGCTTCCGGAGTTAGAAAGACGATGCAGGCACAATGGT
TTGTCTCTCATAGGTGGTAGGGAAATGATGGTTTCTCGGTTACTTTACCTTGAGGAAGCA
GAGAAACAGAGAGGATATGAACTGGATGATGATCTAAAACATGTAAACCGTCCAAATTCT
GACAGATACCCTAGTAGCCAAAAAGAGACCAATAATAAGTTGGATCAGATGGCTTCAGGC
TGGAATAGTTATGTGAATGACGACAAACAACTCGAAGGCAAAGTCTCTATGTCGTCGGTT
CCCTCAAATTCTAGTCCACAGTTTGATTCAAATGACTTATTTGATGAGGGTAAAAATGGG
TCTATTTTGCCAGCCTCTAAATGGGCCAGGGAGGATAATGATAGTGATGATGAACAAAAG
AGAGATATGAGAGACCTGGGGCTGACATATTCATCTTCTGGAAGTGAAAATGCTGGAGAT
GGCATTGGTAAGATTGAGGAGATGGGACTTACAACTGACACGAGCAATTCAACACATCTA
GAAAGTGGAATGACTGAAGAACAGAGACAAAAGTTGAGGCGCCTTGAGGTTGCTTTGATT
GAATATCGCGAATCTCTTGAAGAGCGAGGGATAAATAATCCAGATGAAATAGAAAAGAAA
GTTGAAATCCATCGGCAACGGCTTCAATCTGAATATGGTTTAGCAAATTTCAGTCAAGAT
GTTTCAAGAAAGACGAGTAAGTTAACTTCAGAGAGGAGGGATAAGAGAGAGGATCCCCGG
GAAACTTCAAGGAAACGTCATCGAAGCAGAAGTGGAAGTGAAAGCCCTCAGAGGAAATCT
TCCAGCAGAGACAGGGAAAATGATGTGAACAGAGACAAGGAAAAACGACGAGAGAGGGAA
AGGGTTCACGATGTAGAAAGTGAAAAACAGAGAGACAGTGGACGGGAGAGTAAGAGAGGA
AGCAGGGAGAGGGATGACGATAGTAGAGACAGATCCAGGGAGAGAAGACGAGTCAGATGA

Peptide Sequence

PEP ID

XP_016498031.1
PEP Infomation

PREDICTED: protein RRC1-like [Nicotiana tabacum]
Sequence

MWPRTEEERRRQRNCGFVAFMNRADAQAAKDEMEGVIVYEYELKIGWGKSVSLPSQALPA
PPPGHMAIRSKEGATVILSGPSGPPVTSIPSQNSELVLTPNVPDIMVVPPEDDHLCHVID
TMSLYVLDGGCAFEQAIMERGRGNSLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTE
PFIMISGSGRWIPPPLPTSKGDENERELGTAYATGKSRRVEVERTLTDAQRDEFEDMLRS
LTLERSQIREAMGFALDNADAAGEVVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAP
IKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYV
NGLRATFLRSGNSGVILFHSLGGDAPELEQTISTKTALDGDKVNQDAALAIGKGAAMKEL
LSLPLPELERRCRHNGLSLIGGREMMVSRLLYLEEAEKQRGYELDDDLKHVNRPNSDRYP
SSQKETNNKLDQMASGWNSYVNDDKQLEGKVSMSSVPSNSSPQFDSNDLFDEGKNGSILP
ASKWAREDNDSDDEQKRDMRDLGLTYSSSGSENAGDGIGKIEEMGLTTDTSNSTHLESGM
TEEQRQKLRRLEVALIEYRESLEERGINNPDEIEKKVEIHRQRLQSEYGLANFSQDVSRK
TSKLTSERRDKREDPRETSRKRHRSRSGSESPQRKSSSRDRENDVNRDKEKRRERERVHD
VESEKQRDSGRESKRGSRERDDDSRDRSRERRRVR

Transcript Sequence

Gene sequence data has not been registered.